From d579abd6cef66f0dff9da3d12fd2df03d30dc7bc Mon Sep 17 00:00:00 2001
From: Biswapriyo Nath <nathbappai@gmail.com>
Date: Wed, 17 May 2023 23:04:57 +0530
Subject: [PATCH] python-biopython: update to 1.81, port to pyproject

---
 mingw-w64-python-biopython/PKGBUILD | 28 ++++++++++++++--------------
 1 file changed, 14 insertions(+), 14 deletions(-)

diff --git a/mingw-w64-python-biopython/PKGBUILD b/mingw-w64-python-biopython/PKGBUILD
index 6d95de2b76..48341defde 100644
--- a/mingw-w64-python-biopython/PKGBUILD
+++ b/mingw-w64-python-biopython/PKGBUILD
@@ -6,7 +6,7 @@ pkgname=("${MINGW_PACKAGE_PREFIX}-python-${_realname}")
 provides=("${MINGW_PACKAGE_PREFIX}-python3-${_realname}")
 conflicts=("${MINGW_PACKAGE_PREFIX}-python3-${_realname}")
 replaces=("${MINGW_PACKAGE_PREFIX}-python3-${_realname}")
-pkgver=1.80
+pkgver=1.81
 pkgrel=1
 pkgdesc="A set of freely available tools for biological computation written in Python (mingw-w64)"
 arch=('any')
@@ -15,26 +15,26 @@ license=('Biopython')
 url="https://biopython.org/"
 depends=("${MINGW_PACKAGE_PREFIX}-python"
          "${MINGW_PACKAGE_PREFIX}-python-numpy")
-makedepends=("${MINGW_PACKAGE_PREFIX}-python-setuptools" "${MINGW_PACKAGE_PREFIX}-cc")
+makedepends=("${MINGW_PACKAGE_PREFIX}-python-build"
+             "${MINGW_PACKAGE_PREFIX}-python-installer"
+             "${MINGW_PACKAGE_PREFIX}-python-setuptools"
+             "${MINGW_PACKAGE_PREFIX}-python-wheel"
+             "${MINGW_PACKAGE_PREFIX}-cc")
 source=(${_realname}-${pkgver}.tar.gz::https://biopython.org/DIST/${_realname}-${pkgver}.tar.gz)
-sha256sums=('52805e9af88767e450e2df8113b5bc59e964e2e8a7bb803a83570bdbb51c0e43')
-
-prepare() {
-  cd "${srcdir}"
-  rm -rf "python-build-${CARCH}" | true
-  cp -r "${_realname}-${pkgver}" "python-build-${CARCH}"
-}
+sha256sums=('2cf38112b6d8415ad39d6a611988cd11fb5f33eb09346666a87263beba9614e0')
 
 build() {
-  cd "${srcdir}/python-build-${CARCH}"
-  ${MINGW_PREFIX}/bin/python setup.py build
+  cp -r "${_realname}-${pkgver}" "python-build-${MSYSTEM}" && cd "python-build-${MSYSTEM}"
+  ${MINGW_PREFIX}/bin/python -m build --wheel --skip-dependency-check --no-isolation
 }
 
 package() {
-  cd "${srcdir}/python-build-${CARCH}"
+  msg "Python install for ${MSYSTEM}"
+  cd "${srcdir}/python-build-${MSYSTEM}"
 
-  MSYS2_ARG_CONV_EXCL="--prefix=;--install-scripts=;--install-platlib=" \
-    ${MINGW_PREFIX}/bin/python setup.py install --prefix=${MINGW_PREFIX} --root="${pkgdir}" -O1 --skip-build
+  MSYS2_ARG_CONV_EXCL="--prefix=" \
+    ${MINGW_PREFIX}/bin/python -m installer --prefix=${MINGW_PREFIX} \
+    --destdir="${pkgdir}" dist/*.whl
 
   install -Dm644 LICENSE.rst "${pkgdir}${MINGW_PREFIX}/share/licenses/python-${_realname}/LICENSE.rst"
 }