62 lines
1.6 KiB
Bash
62 lines
1.6 KiB
Bash
# Contributor: Teemu Nätkinniemi ("teepean") <tnatkinn@gmail.com>
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_realname=samtools
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pkgbase=mingw-w64-${_realname}
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pkgname="${MINGW_PACKAGE_PREFIX}-${_realname}"
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pkgver=1.22.1
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pkgrel=1
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pkgdesc="tools for manipulating next-generation sequencing data"
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arch=('any')
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mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
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msys2_repository_url='https://github.com/samtools/samtools'
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url="http://www.htslib.org/"
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license=('custom')
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depends=("${MINGW_PACKAGE_PREFIX}-htslib"
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"${MINGW_PACKAGE_PREFIX}-ncurses"
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"${MINGW_PACKAGE_PREFIX}-xz"
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"${MINGW_PACKAGE_PREFIX}-bzip2"
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"${MINGW_PACKAGE_PREFIX}-zlib"
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"${MINGW_PACKAGE_PREFIX}-libdeflate")
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makedepends=(
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"${MINGW_PACKAGE_PREFIX}-cc"
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"${MINGW_PACKAGE_PREFIX}-autotools"
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)
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source=(https://github.com/samtools/samtools/releases/download/$pkgver/$_realname-$pkgver.tar.bz2)
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sha256sums=('02aa5cd0ba52e06c2080054e059d7d77a885dfe9717c31cd89dfe7a4047eda0e')
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prepare() {
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cd $srcdir/$_realname-$pkgver
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# prevent shipped htslib to be used
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rm -rf htslib-$pkgver || exit 1
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}
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build() {
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cd $srcdir/$_realname-$pkgver
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./configure \
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--prefix=${MINGW_PREFIX} \
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--build=${MINGW_CHOST} \
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--host=${MINGW_CHOST} \
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--target=${MINGW_CHOST} \
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--with-htslib=system
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make
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}
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check() {
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cd $srcdir/$_realname-$pkgver
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make check || warning "Tests failed"
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}
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package() {
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cd $srcdir/$_realname-$pkgver
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make DESTDIR=$pkgdir install
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install -d $pkgdir${MINGW_PREFIX}/include/bam
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install -Dm644 *.h $pkgdir${MINGW_PREFIX}/include/bam
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install -Dm644 LICENSE $pkgdir${MINGW_PREFIX}/share/licenses/$_realname/LICENSE
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}
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