55 lines
1.3 KiB
Bash
55 lines
1.3 KiB
Bash
# Contributor: Teemu Nätkinniemi ("teepean") <tnatkinn@gmail.com>
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_realname=bcftools
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pkgbase=mingw-w64-${_realname}
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pkgname="${MINGW_PACKAGE_PREFIX}-${_realname}"
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pkgver=1.22
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pkgrel=1
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pkgdesc="tools for manipulating next-generation sequencing data (mingw-w64)"
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arch=('any')
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mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
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url="http://www.htslib.org/"
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msys2_repository_url="https://github.com/samtools/bcftools"
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license=('spdx:MIT')
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depends=("${MINGW_PACKAGE_PREFIX}-htslib"
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"${MINGW_PACKAGE_PREFIX}-zlib")
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makedepends=(
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"${MINGW_PACKAGE_PREFIX}-cc"
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"${MINGW_PACKAGE_PREFIX}-autotools"
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)
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source=(https://github.com/samtools/bcftools/releases/download/$pkgver/$_realname-$pkgver.tar.bz2)
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sha256sums=('f2ab9e2f605b1203a7e9cbfb0a3eb7689322297f8c34b45dc5237fe57d98489f')
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prepare() {
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cd $srcdir/$_realname-$pkgver
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# prevent shipped htslib to be used
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rm -rf htslib-$pkgver || exit 1
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}
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build() {
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cd $srcdir/$_realname-$pkgver
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./configure \
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--prefix=${MINGW_PREFIX} \
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--build=${MINGW_CHOST} \
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--host=${MINGW_CHOST} \
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--target=${MINGW_CHOST} \
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--with-htslib=system
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make
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}
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check() {
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cd $srcdir/$_realname-$pkgver
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make check || warning "Tests failed"
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}
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package() {
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cd $srcdir/$_realname-$pkgver
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make DESTDIR=$pkgdir install
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install -Dm644 LICENSE $pkgdir${MINGW_PREFIX}/share/licenses/$_realname/LICENSE
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}
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