hdf5 2.0 rebuilds

2025-12-14 17:01:24 +01:00
parent 42462f2a28
commit 1aebc2bfed
26 changed files with 42 additions and 35 deletions
--- a/mingw-w64-adios2/PKGBUILD
+++ b/mingw-w64-adios2/PKGBUILD
@@ -4,7 +4,7 @@ _realname=ADIOS2
 pkgbase=mingw-w64-${_realname,,}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname,,}")
 pkgver=2.11.0
-pkgrel=1
+pkgrel=2
 pkgdesc="The Adaptable Input/Output System version 2 (mingw-w64)"
 arch=(any)
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-alembic/PKGBUILD
+++ b/mingw-w64-alembic/PKGBUILD
@@ -4,7 +4,7 @@ _realname=alembic
 pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}")
 pkgver=1.8.5
-pkgrel=3
+pkgrel=4
 pkgdesc="A open framework for storing and sharing scene data (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-avogadrolibs/PKGBUILD
+++ b/mingw-w64-avogadrolibs/PKGBUILD
@@ -5,7 +5,7 @@ pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}"
         "${MINGW_PACKAGE_PREFIX}-${_realname}-qt6")
 pkgver=1.102.1
-pkgrel=1
+pkgrel=2
 pkgdesc='Libraries that provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas (mingw-w64)'
 arch=(any)
 mingw_arch=(ucrt64 clang64 clangarm64)
--- a/mingw-w64-cgns/PKGBUILD
+++ b/mingw-w64-cgns/PKGBUILD
@@ -4,18 +4,18 @@ _realname=cgns
 pkgbase=mingw-w64-${_realname}
 pkgname="${MINGW_PACKAGE_PREFIX}-${_realname}"
 pkgver=4.4.0
-pkgrel=2
+pkgrel=3
 pkgdesc="CFD General Notation System library and tools (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
 url="https://cgns.github.io"
 license=('spdx:Zlib')
+depends=("${MINGW_PACKAGE_PREFIX}-cc-libs"
+         "${MINGW_PACKAGE_PREFIX}-hdf5")
 makedepends=("${MINGW_PACKAGE_PREFIX}-cc"
             "${MINGW_PACKAGE_PREFIX}-fc"
             "${MINGW_PACKAGE_PREFIX}-cmake"
             "${MINGW_PACKAGE_PREFIX}-ninja")
-depends=("${MINGW_PACKAGE_PREFIX}-cc-libs"
-         "${MINGW_PACKAGE_PREFIX}-hdf5")
 source=(https://github.com/CGNS/CGNS/archive/v${pkgver}/${_realname}-${pkgver}.tar.gz)
 sha256sums=('3b0615d1e6b566aa8772616ba5fd9ca4eca1a600720e36eadd914be348925fe2')

--- a/mingw-w64-gdal/PKGBUILD
+++ b/mingw-w64-gdal/PKGBUILD
@@ -9,7 +9,7 @@ pkgbase=mingw-w64-${_realname,,}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}"
         "${MINGW_PACKAGE_PREFIX}-python-${_realname}")
 pkgver=3.11.4
-pkgrel=2
+pkgrel=3
 pkgdesc="A translator library for raster geospatial data formats (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-itk/PKGBUILD
+++ b/mingw-w64-itk/PKGBUILD
@@ -4,7 +4,7 @@ _realname=itk
 pkgbase=mingw-w64-${_realname}
 pkgname="${MINGW_PACKAGE_PREFIX}-${_realname}"
 pkgver=5.4.4
-pkgrel=4
+pkgrel=5
 pkgdesc='An open-source C++ toolkit for medical image processing (mingw-w64)'
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-labplot/PKGBUILD
+++ b/mingw-w64-labplot/PKGBUILD
@@ -4,7 +4,7 @@ _realname=labplot
 pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}")
 pkgver=2.12.1
-pkgrel=1
+pkgrel=2
 pkgdesc="FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. (mingw-w64)"
 arch=('any')
 mingw_arch=('ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-mathgl/PKGBUILD
+++ b/mingw-w64-mathgl/PKGBUILD
@@ -4,7 +4,7 @@ _realname=mathgl
 pkgbase=mingw-w64-${_realname}
 pkgname="${MINGW_PACKAGE_PREFIX}-${_realname}"
 pkgver=8.0.3
-pkgrel=4
+pkgrel=5
 pkgdesc="Library for high-quality scientific graphics (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-matio/PKGBUILD
+++ b/mingw-w64-matio/PKGBUILD
@@ -4,7 +4,7 @@ _realname=matio
 pkgbase=mingw-w64-${_realname}
 pkgname="${MINGW_PACKAGE_PREFIX}-${_realname}"
 pkgver=1.5.29
-pkgrel=1
+pkgrel=2
 pkgdesc="C library for reading and writing MATLAB MAT files (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-med/PKGBUILD
+++ b/mingw-w64-med/PKGBUILD
@@ -8,7 +8,7 @@ _realname=med
 pkgbase=mingw-w64-${_realname}
 pkgname=${MINGW_PACKAGE_PREFIX}-${_realname}
 pkgver=5.0.0
-pkgrel=1
+pkgrel=2
 pkgdesc="Generic pre- and post-processing platform for numerical simulation (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
@@ -45,7 +45,6 @@ prepare() {
    hdf5-1.14.patch \
    gcc-15.patch \
    bin-dest.patch
-  sed -i 's/if H5_VERS_MINOR > 10/if 0/g' src/ci/MEDfileCompatibility.c
 }

 build() {
@@ -56,7 +55,7 @@ build() {
    _extra_config+=("-DCMAKE_BUILD_TYPE=Debug")
  fi

-  CFLAGS+=" -DH5_USE_110_API -Wno-implicit-function-declaration -Wno-incompatible-pointer-types"
+  CFLAGS+=" -Wno-implicit-function-declaration"

  # Static Build
  mkdir -p "${srcdir}/build-${MSYSTEM}-static" && cd "${srcdir}/build-${MSYSTEM}-static"
--- a/mingw-w64-netcdf-cxx/PKGBUILD
+++ b/mingw-w64-netcdf-cxx/PKGBUILD
@@ -3,7 +3,7 @@ _realname=netcdf-cxx
 pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}")
 pkgver=4.3.1
-pkgrel=6
+pkgrel=7
 pkgdesc="NetCDF C++ bindings (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-netcdf/PKGBUILD
+++ b/mingw-w64-netcdf/PKGBUILD
@@ -4,7 +4,7 @@ _realname=netcdf
 pkgbase=mingw-w64-${_realname}
 pkgname="${MINGW_PACKAGE_PREFIX}-${_realname}"
 pkgver=4.9.3
-pkgrel=6
+pkgrel=7
 pkgdesc="Interface for scientific data access to large binary data (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
@@ -12,6 +12,8 @@ url="https://www.unidata.ucar.edu/software/netcdf/"
 msys2_repository_url="https://github.com/Unidata/netcdf-c"
 license=('spdx:BSD-3-Clause')
 depends=("${MINGW_PACKAGE_PREFIX}-curl"
+         "${MINGW_PACKAGE_PREFIX}-aws-crt-cpp"
+         "${MINGW_PACKAGE_PREFIX}-aws-sdk-cpp"
         "${MINGW_PACKAGE_PREFIX}-hdf5"
         "${MINGW_PACKAGE_PREFIX}-libxml2"
         "${MINGW_PACKAGE_PREFIX}-libzip")
@@ -28,9 +30,11 @@ optdepends=("${MINGW_PACKAGE_PREFIX}-netcdf-c++: C++ bindings"
            "${MINGW_PACKAGE_PREFIX}-blosc: blosc and zstdfilters plugins")
 checkdepends=("unzip")
 source=("https://github.com/Unidata/netcdf-c/archive/v${pkgver}/${_realname}-${pkgver}.tar.gz"
-        "0001-no-debug-libraries.patch")
+        "0001-no-debug-libraries.patch"
+        "0002-fix-build-with-hdf5-2.0.patch::https://github.com/Unidata/netcdf-c/commit/741c4b4a.patch")
 sha256sums=('990f46d49525d6ab5dc4249f8684c6deeaf54de6fec63a187e9fb382cc0ffdff'
-            'a16300682b43de63bead0a42211b2219820599a6eb3d60bc83c27f85a1c64711')
+            'a16300682b43de63bead0a42211b2219820599a6eb3d60bc83c27f85a1c64711'
+            '304e8bb0e083d97718073ff7e8a80da26f0ad4f7bc0fe28f3f29b00f55be301a')

 # Helper macros to help make tasks easier #
 apply_patch_with_msg() {
@@ -45,7 +49,8 @@ prepare() {
  cd "${srcdir}/${_realname}-c-${pkgver}"

  apply_patch_with_msg \
-    0001-no-debug-libraries.patch
+    0001-no-debug-libraries.patch \
+    0002-fix-build-with-hdf5-2.0.patch
 }

 build() {
@@ -101,6 +106,7 @@ build() {
    -DNETCDF_ENABLE_HDF5=ON \
    -DNETCDF_ENABLE_BYTERANGE=ON \
    -DNETCDF_ENABLE_LOGGING=ON \
+    -DNETCDF_ENABLE_S3_AWS=ON \
    -DENABLE_PLUGIN_INSTALL=ON \
    -DNETCDF_WITH_PLUGIN_DIR=${MINGW_PREFIX}/lib/netcdf \
    -Wno-dev \
--- a/mingw-w64-octave/PKGBUILD
+++ b/mingw-w64-octave/PKGBUILD
@@ -4,7 +4,7 @@ _realname=octave
 pkgbase=mingw-w64-${_realname}
 pkgname=${MINGW_PACKAGE_PREFIX}-${_realname}
 pkgver=10.3.0
-pkgrel=1
+pkgrel=2
 pkgdesc="GNU Octave: Interactive programming environment for numerical computations (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-opencv/PKGBUILD
+++ b/mingw-w64-opencv/PKGBUILD
@@ -7,7 +7,7 @@ pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}"
         "${MINGW_PACKAGE_PREFIX}-python-${_realname}")
 pkgver=4.12.0
-pkgrel=9
+pkgrel=10
 pkgdesc="Open Source Computer Vision Library (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-openturns/PKGBUILD
+++ b/mingw-w64-openturns/PKGBUILD
@@ -4,7 +4,7 @@ _realname=openturns
 pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}")
 pkgver=1.25
-pkgrel=1
+pkgrel=2
 pkgdesc="Uncertainty treatment library (mingw-w64)"
 arch=(any)
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-ossia-score/PKGBUILD
+++ b/mingw-w64-ossia-score/PKGBUILD
@@ -4,7 +4,7 @@ _realname=ossia-score
 pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}")
 pkgver=3.7.1
-pkgrel=1
+pkgrel=2
 pkgdesc="ossia score, an interactive sequencer for the intermedia arts"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-paraview/PKGBUILD
+++ b/mingw-w64-paraview/PKGBUILD
@@ -4,7 +4,7 @@ _realname=paraview
 pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}")
 pkgver=6.0.1
-pkgrel=3
+pkgrel=4
 pkgdesc="Parallel Data Analysis and Visualization Application based on VTK. (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-pdal/PKGBUILD
+++ b/mingw-w64-pdal/PKGBUILD
@@ -4,7 +4,7 @@ _realname=pdal
 pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}")
 pkgver=2.9.2
-pkgrel=1
+pkgrel=2
 pkgdesc="A C++ library for translating and manipulating point cloud data (mingw-w64)"
 arch=(any)
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-python-h5py/PKGBUILD
+++ b/mingw-w64-python-h5py/PKGBUILD
@@ -4,7 +4,7 @@ _realname=h5py
 pkgbase=mingw-w64-python-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-python-${_realname}")
 pkgver=3.15.1
-pkgrel=1
+pkgrel=2
 pkgdesc="General-purpose Python bindings for the HDF5 library (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-qgis/PKGBUILD
+++ b/mingw-w64-qgis/PKGBUILD
@@ -14,12 +14,13 @@ msys2_references=(
  'archlinux: qgis'
 )
 license=('spdx:GPL-2.0-or-later')
-depends=("${MINGW_PACKAGE_PREFIX}-draco"
-         "${MINGW_PACKAGE_PREFIX}-cc-libs"
+depends=("${MINGW_PACKAGE_PREFIX}-cc-libs"
+         "${MINGW_PACKAGE_PREFIX}-draco"
+         "${MINGW_PACKAGE_PREFIX}-exiv2"
         "${MINGW_PACKAGE_PREFIX}-gdal"
         "${MINGW_PACKAGE_PREFIX}-geos"
         "${MINGW_PACKAGE_PREFIX}-gsl"
-         "${MINGW_PACKAGE_PREFIX}-exiv2"
+         "${MINGW_PACKAGE_PREFIX}-hdf5"
         "${MINGW_PACKAGE_PREFIX}-libspatialite"
         "${MINGW_PACKAGE_PREFIX}-libxml2"
         "${MINGW_PACKAGE_PREFIX}-libzip"
--- a/mingw-w64-quantum-espresso/PKGBUILD
+++ b/mingw-w64-quantum-espresso/PKGBUILD
@@ -4,7 +4,7 @@ _realname=quantum-espresso
 pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}")
 pkgver=7.5
-pkgrel=1
+pkgrel=2
 #_d3q_commit=de4718351e7bbb9d1d12aad2b7ca232d06775b83
 _devxlib_commit=a6b89ef77b1ceda48e967921f1f5488d2df9226d
 _fox_commit=3453648e6837658b747b895bb7bef4b1ed2eac40
--- a/mingw-w64-seacas/PKGBUILD
+++ b/mingw-w64-seacas/PKGBUILD
@@ -5,7 +5,7 @@ pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}")
 pkgver=2025.10.14
 _releases=${pkgver//./-}
-pkgrel=2
+pkgrel=3
 pkgdesc="The Sandia Engineering Analysis Code Access System (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
@@ -17,6 +17,7 @@ depends=("${MINGW_PACKAGE_PREFIX}-cc-libs"
         #"${MINGW_PACKAGE_PREFIX}-adios2"
         #"${MINGW_PACKAGE_PREFIX}-aws-sdk-cpp"
         "${MINGW_PACKAGE_PREFIX}-cgns"
+         "${MINGW_PACKAGE_PREFIX}-hdf5"
         "${MINGW_PACKAGE_PREFIX}-fmt"
         "${MINGW_PACKAGE_PREFIX}-libwinpthread"
         "${MINGW_PACKAGE_PREFIX}-metis"
--- a/mingw-w64-starpu/PKGBUILD
+++ b/mingw-w64-starpu/PKGBUILD
@@ -4,7 +4,7 @@ _realname=starpu
 pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}")
 pkgver=1.4.9
-pkgrel=1
+pkgrel=2
 pkgdesc='StarPU is a task programming library for hybrid architectures (mingw-w64)'
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-vigra/PKGBUILD
+++ b/mingw-w64-vigra/PKGBUILD
@@ -5,7 +5,7 @@ pkgbase=mingw-w64-${_realname}
 pkgname="${MINGW_PACKAGE_PREFIX}-${_realname}"
 pkgver=1.12.2
 _pkgver=${pkgver//./-}
-pkgrel=5
+pkgrel=6
 pkgdesc="vigra - Generic Programming for Computer Vision (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-viskores/PKGBUILD
+++ b/mingw-w64-viskores/PKGBUILD
@@ -4,7 +4,7 @@ _realname=viskores
 pkgbase=mingw-w64-${_realname}
 pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}")
 pkgver=1.0.0
-pkgrel=3
+pkgrel=4
 pkgdesc="A visualization library for many-threaded devices. (mingw-w64)"
 arch=('any')
 mingw_arch=('ucrt64' 'clang64' 'clangarm64')
--- a/mingw-w64-vtk/PKGBUILD
+++ b/mingw-w64-vtk/PKGBUILD
@@ -5,7 +5,7 @@ _realname=vtk
 pkgbase="mingw-w64-${_realname}"
 pkgname="${MINGW_PACKAGE_PREFIX}-${_realname}"
 pkgver=9.5.2
-pkgrel=4
+pkgrel=5
 pkgdesc="A software system for 3D computer graphics, image processing and visualization (mingw-w64)"
 arch=('any')
 mingw_arch=('mingw64' 'ucrt64' 'clang64' 'clangarm64')