Merge pull request #5962 from okhlybov/parmetis2

New package: parmetis
2019-12-03 08:09:42 +03:00
parent 63312fad91 d6f381766d
commit c3f1a1025b
6 changed files with 216 additions and 0 deletions
--- a/mingw-w64-parmetis/0001-mingw-w64-does-not-have-sys-resource-h.patch
+++ b/mingw-w64-parmetis/0001-mingw-w64-does-not-have-sys-resource-h.patch
@@ -0,0 +1,13 @@
+diff -urN parmetis-4.0.3.orig/metis/GKlib/gk_arch.h parmetis-4.0.3/metis/GKlib/gk_arch.h
+--- parmetis-4.0.3.orig/metis/GKlib/gk_arch.h	2013-03-30 08:24:50.000000000 -0700
+++ parmetis-4.0.3/metis/GKlib/gk_arch.h	2019-11-13 22:02:07.318990500 -0800
+@@ -41,7 +41,9 @@
+ #endif
+   #include <inttypes.h>
+   #include <sys/types.h>
+#ifndef __MINGW32__
+   #include <sys/resource.h>
+#endif
+   #include <sys/time.h>
+ #endif
+ 
--- a/mingw-w64-parmetis/0002-mingw-w64-do-not-use-reserved-double-underscored-names.patch
+++ b/mingw-w64-parmetis/0002-mingw-w64-do-not-use-reserved-double-underscored-names.patch
@@ -0,0 +1,21 @@
+diff -urN parmetis-4.0.3.orig/metis/GKlib/gk_getopt.h parmetis-4.0.3/metis/GKlib/gk_getopt.h
+--- parmetis-4.0.3.orig/metis/GKlib/gk_getopt.h	2013-03-30 08:24:50.000000000 -0700
+++ parmetis-4.0.3/metis/GKlib/gk_getopt.h	2019-11-11 22:48:38.248965700 -0800
+@@ -52,12 +52,11 @@
+ 
+ 
+ /* Function prototypes */
+-extern int gk_getopt(int __argc, char **__argv, char *__shortopts);
+-extern int gk_getopt_long(int __argc, char **__argv, char *__shortopts,
+-              struct gk_option *__longopts, int *__longind);
+-extern int gk_getopt_long_only (int __argc, char **__argv,
+-              char *__shortopts, struct gk_option *__longopts, int *__longind);
+-
+extern int gk_getopt(int gk_argc, char **gk_argv, char *__shortopts);
+extern int gk_getopt_long(int gk_argc, char **gk_argv, char *__shortopts,
+               struct gk_option *__longopts, int *__longind);
+extern int gk_getopt_long_only (int gk_argc, char **gk_argv,
+               char *__shortopts, struct gk_option *__longopts, int *__longind);
+ 
+ 
+ #endif
--- a/mingw-w64-parmetis/0003-WIN32-Install-RUNTIME-to-bin.patch
+++ b/mingw-w64-parmetis/0003-WIN32-Install-RUNTIME-to-bin.patch
@@ -0,0 +1,18 @@
+diff -urN parmetis-4.0.3.orig/libparmetis/CMakeLists.txt parmetis-4.0.3/libparmetis/CMakeLists.txt
+--- parmetis-4.0.3.orig/libparmetis/CMakeLists.txt	2013-03-30 08:24:50.000000000 -0700
+++ parmetis-4.0.3/libparmetis/CMakeLists.txt	2019-11-11 23:27:19.061446400 -0800
+@@ -8,7 +8,13 @@
+ target_link_libraries(parmetis metis ${MPI_LIBRARIES})
+ set_target_properties(parmetis PROPERTIES LINK_FLAGS "${MPI_LINK_FLAGS}")
+ 
+if(WIN32)
+  set(RT_DEST bin)
+else()
+  set(RT_DEST lib)
+endif()
+
+ install(TARGETS parmetis
+   LIBRARY DESTINATION lib
+-  RUNTIME DESTINATION lib
+  RUNTIME DESTINATION ${RT_DEST}
+   ARCHIVE DESTINATION lib)
--- a/mingw-w64-parmetis/0004-METIS-GKLIB-location.patch
+++ b/mingw-w64-parmetis/0004-METIS-GKLIB-location.patch
@@ -0,0 +1,65 @@
+diff -urN parmetis-4.0.3.orig/CMakeLists.txt parmetis-4.0.3/CMakeLists.txt
+--- parmetis-4.0.3.orig/CMakeLists.txt	2013-03-30 08:24:50.000000000 -0700
+++ parmetis-4.0.3/CMakeLists.txt	2019-11-12 01:46:27.177627800 -0800
+@@ -1,12 +1,18 @@
+ cmake_minimum_required(VERSION 2.8)
+ project(ParMETIS)
+ 
+-set(GKLIB_PATH METIS/GKlib CACHE PATH "path to GKlib")
+-set(METIS_PATH METIS CACHE PATH "path to METIS")
+include(FindPkgConfig)
+pkg_check_modules(METIS metis)
+if(NOT METIS_FOUND)
+  message(FATAL_ERROR "metis is not found")
+endif()
+
+set(GKLIB_PATH "${CMAKE_SOURCE_DIR}/metis/GKlib" CACHE PATH "path to GKlib")
+#set(METIS_PATH METIS CACHE PATH "path to METIS")
+ 
+ # Symlink ./metis to wherever metis is. This allows files to be
+ # included from metis/libmetis/.
+-execute_process(COMMAND ${CMAKE_COMMAND} -E create_symlink ${METIS_PATH} metis)
+#execute_process(COMMAND ${CMAKE_COMMAND} -E create_symlink ${METIS_PATH} metis)
+ 
+ # Search for MPI.
+ # GK commented this out as it seems to be creating problems
+@@ -30,10 +36,11 @@
+ include_directories(include)
+ include_directories(${MPI_INCLUDE_PATH})
+ include_directories(${GKLIB_PATH})
+-include_directories(${METIS_PATH}/include)
+#include_directories(${METIS_PATH}/include)
+include_directories(${METIS_INCLUDE_DIRS})
+ 
+ # List of directories that cmake will look for CMakeLists.txt
+-add_subdirectory(${METIS_PATH}/libmetis ${CMAKE_BINARY_DIR}/libmetis)
+#add_subdirectory(${METIS_PATH}/libmetis ${CMAKE_BINARY_DIR}/libmetis)
+ add_subdirectory(include)
+ add_subdirectory(libparmetis)
+ add_subdirectory(programs)
+diff -urN parmetis-4.0.3.orig/libparmetis/CMakeLists.txt parmetis-4.0.3/libparmetis/CMakeLists.txt
+--- parmetis-4.0.3.orig/libparmetis/CMakeLists.txt	2013-03-30 08:24:50.000000000 -0700
+++ parmetis-4.0.3/libparmetis/CMakeLists.txt	2019-11-12 01:37:03.599001000 -0800
+@@ -5,7 +5,7 @@
+ # Create libparmetis
+ add_library(parmetis ${ParMETIS_LIBRARY_TYPE} ${parmetis_sources})
+ # Link with metis and MPI libraries.
+-target_link_libraries(parmetis metis ${MPI_LIBRARIES})
+target_link_libraries(parmetis ${METIS_LINK_LIBRARIES} ${MPI_LIBRARIES})
+ set_target_properties(parmetis PROPERTIES LINK_FLAGS "${MPI_LINK_FLAGS}")
+ 
+ install(TARGETS parmetis
+diff -urN parmetis-4.0.3.orig/metis/GKlib/CMakeLists.txt parmetis-4.0.3/metis/GKlib/CMakeLists.txt
+--- parmetis-4.0.3.orig/metis/GKlib/CMakeLists.txt	2013-03-30 08:24:50.000000000 -0700
+++ parmetis-4.0.3/metis/GKlib/CMakeLists.txt	2019-11-12 01:45:02.052483700 -0800
+@@ -1,9 +1,7 @@
+ cmake_minimum_required(VERSION 2.8)
+ project(GKlib)
+ 
+-get_filename_component(abs "." ABSOLUTE)
+-set(GKLIB_PATH ${abs})
+-unset(abs)
+set(GKLIB_PATH "${CMAKE_SOURCE_DIR}/metis/GKlib" CACHE PATH "path to GKlib")
+ include(GKlibSystem.cmake)
+ 
+ include_directories(".")
--- a/mingw-w64-parmetis/0005-find-MPI.patch
+++ b/mingw-w64-parmetis/0005-find-MPI.patch
@@ -0,0 +1,21 @@
+diff -urN parmetis-4.0.3.orig/CMakeLists.txt parmetis-4.0.3/CMakeLists.txt
+--- parmetis-4.0.3.orig/CMakeLists.txt	2013-03-30 08:24:50.000000000 -0700
+++ parmetis-4.0.3/CMakeLists.txt	2019-11-12 00:35:22.652916600 -0800
+@@ -9,12 +9,11 @@
+ execute_process(COMMAND ${CMAKE_COMMAND} -E create_symlink ${METIS_PATH} metis)
+ 
+ # Search for MPI.
+-# GK commented this out as it seems to be creating problems
+-# include(FindMPI)
+-# if(NOT MPI_FOUND)
+-#   message(FATAL_ERROR "mpi is not found")
+-# endif()
+-# set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${MPI_COMPILE_FLAGS}")
+include(FindMPI)
+if(NOT MPI_FOUND)
+  message(FATAL_ERROR "mpi is not found")
+endif()
+set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${MPI_COMPILE_FLAGS}")
+ 
+ # Prepare libraries.
+ if(SHARED)
--- a/mingw-w64-parmetis/PKGBUILD
+++ b/mingw-w64-parmetis/PKGBUILD
@@ -0,0 +1,78 @@
+# Contributor: Oleg A. Khlybov <fougas@mail.ru>
+
+_realname=parmetis
+pkgbase=mingw-w64-${_realname}
+pkgname=("${MINGW_PACKAGE_PREFIX}-${_realname}")
+pkgver=4.0.3
+pkgrel=1
+pkgdesc="Parallel Graph Partitioning and Fill-reducing Matrix Ordering (mingw-w64)"
+arch=('any')
+url='http://glaros.dtc.umn.edu/gkhome/views/parmetis'
+license=('Apache')
+depends=("${MINGW_PACKAGE_PREFIX}-metis>=5.1.0" "${MINGW_PACKAGE_PREFIX}-msmpi")
+makedepends=("${MINGW_PACKAGE_PREFIX}-cmake")
+options=('strip' 'staticlibs')
+source=("http://glaros.dtc.umn.edu/gkhome/fetch/sw/${_realname}/parmetis-${pkgver}.tar.gz"
+        "0001-mingw-w64-does-not-have-sys-resource-h.patch"
+        "0002-mingw-w64-do-not-use-reserved-double-underscored-names.patch"
+        "0003-WIN32-Install-RUNTIME-to-bin.patch"
+        "0004-METIS-GKLIB-location.patch"
+        "0005-find-MPI.patch")
+sha256sums=('f2d9a231b7cf97f1fee6e8c9663113ebf6c240d407d3c118c55b3633d6be6e5f'
+            '22e62ec7dfbaf01865b1e09e7b3f3bad20188354efbef6e64d102a03c7bf748b'
+            '141026e4e39f0529a916dce718273875ba12a98b0ebe7c2730e4950866ffc845'
+            'b384fa51e01b9d3384fd067236e34036b0520f375d16abe575005e518dd5b1fd'
+            'f1e7a174460ac79732de10d0f076f87b2ed60d185436bda0698bd012e70ea53c'
+            '642f801967edc196e94e28f7fa3a63759ab33c1a534a5924d404acdcbfea2eb2')
+
+prepare() {
+  cd "${srcdir}"/${_realname}-${pkgver}
+  for p in ${srcdir}/*.patch; do
+    patch -p1 -i "$p"
+  done
+}
+
+build() {
+  for _shared in OFF ON; do
+    cd "$srcdir"/${_realname}-${pkgver}
+    [[ -d "${srcdir}"/build-shared-${_shared}-${CARCH} ]] && rm -rf "${srcdir}"/build-shared-${_shared}-${CARCH}
+    mkdir -p "${srcdir}"/build-shared-${_shared}-${CARCH} && cd "${srcdir}"/build-shared-${_shared}-${CARCH}
+    declare -a extra_config
+    if check_option "debug" "n"; then
+      extra_config+=("-DCMAKE_BUILD_TYPE=Release")
+    else
+      extra_config+=("-DCMAKE_BUILD_TYPE=Debug")
+    fi
+    MSYS2_ARG_CONV_EXCL="-DCMAKE_INSTALL_PREFIX="  \
+      ${MINGW_PREFIX}/bin/cmake                    \
+        -G'MSYS Makefiles'                         \
+        -DCMAKE_INSTALL_PREFIX=${MINGW_PREFIX}     \
+        -DCMAKE_C_COMPILER=mpicc                   \
+        -DCMAKE_CXX_COMPILER=mpicxx                \
+        -DCMAKE_C_FLAGS="${CPPFLAGS} ${CFLAGS}"    \
+        "${extra_config[@]}"                       \
+        -DSHARED=${_shared}                        \
+        ../${_realname}-${pkgver}
+    make
+  done
+}
+
+package() {
+  for _shared in OFF ON; do
+    cd "${srcdir}"/build-shared-${_shared}-${CARCH}
+    make install DESTDIR="${pkgdir}"
+    mkdir -p "${pkgdir}${MINGW_PREFIX}/lib/pkgconfig"
+    echo "
+      prefix=${MINGW_PREFIX}
+      libdir=\${prefix}/lib
+      includedir=\${prefix}/include
+      Name: ${_realname}
+      URL: ${url}
+      Version: ${pkgver}
+      Description: ${pkgdesc}
+      Requires: metis msmpi
+      Cflags: -I\${includedir}
+      Libs: -L\${libdir} -l${_realname}
+    " | sed '/^\s*$/d;s/^\s*//' > "${pkgdir}${MINGW_PREFIX}/lib/pkgconfig/${_realname}.pc"
+  done
+}